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Publication list at scholar.google.com
(2009) The RNA Ontology (RNAO):
An Ontology for Integrating RNA Sequence and Structure Data, by Colin Batchelor
· Thomas
Bittner · Karen Eilbeck · Chris Mungall · Jane Richardson ·
Rob Knight · Jesse Stombaugh · Craig Zirbel · Eric Westhof ·
Neocles Leontis. Proceedings of the International
Conference on Biomedical Ontology, August 2009, pages 7-10.
pdf.
(2009) Understanding sequence variability of RNA motifs using
geometric search and isodiscrepancy matrices, by Anton I. Petrov
· Jesse Stombaugh · Craig L. Zirbel · Neocles B. Leontis.
Proceedings of the 2009 OCCBIO Conference on Bioinformatics.
pdf.
(2009) Classification and energetics of the base-phosphate
interactions in RNA, by Craig L. Zirbel · Judit E. Sponer ·
Jiri Sponer · Jesse Stombaugh · Neocles B. Leontis, Nucleic
Acids Research (2009) 37, No.
15, pages 4898-4918.
pdf.
(2009)
Frequency and isostericity of RNA base pairs, by Jesse Stombaugh ·
Craig L. Zirbel · Eric Westhof · Neocles B. Leontis.
Nucleic Acids Research
(2009) 37, No. 7, pages
2294–2312.
pdf.
(2009)
RNA 3D Structural Motifs: Definition, Identification, Annotation, and
Database Searching, by Lorena Nasalean · Jesse Stombaugh · Craig L.
Zirbel · Neocles B. Leontis. In Non-Protein Coding RNAs, Springer Series in Biophysics , Vol. 13, pp. 1-26. Walter, Nils G.; Woodson, Sarah A.; Batey, Robert T. (Eds.) 2009. google books preview
(2008)
FR3D: Finding Local and Composite Recurrent Structural Motifs in RNA 3D
Structures, by Michael Sarver · Craig L. Zirbel · Jesse Stombaugh · Ali
Mokdad · Neocles B. Leontis. Journal of Mathematical Biology. 56, Nos. 1-2, January 2008.
pdf.
(2003) Discrete velocity fields with explicitly computable Lagrangian law, with Curtis D. Bennett. Journal of Statistical Physics 111 (2003) 681--701.
(2001) Lagrangian observations of homogeneous random environments, Advances in Applied Probability 33 (2001) 810--835. ps pdf
(2000) Markov velocity fields and the generalized Lagrangian velocity ps pdf
(2000) Random velocity fields with known Lagrangian law (Poster from Courant Nonlinear Analysis 2000 conference) ps pdf
(2000) Random velocity fields with known Lagrangian law (Slides from talk at TIES-SPRUCE 2000 conference) ps pdf
(2000) A mean-field statistical theory for the nonlinear Schrödinger equation, with Richard Jordan and Bruce Turkington. Physica D 137, (2000), 353--378. Preprint
(2002) Rotation of particles in polarized Brownian flows, with Wojbor A. Woyczynski. Stochastics and Dynamics 2 (2002) 109--129.
(1997) Translation and dispersion of mass by isotropic Brownian flows ps pdf
(1997) Mass transport by Brownian flows, with Erhan
Çinlar ps pdf
(1997) Mean occupation times of continuous one-dimensional Markov processes ps pdf
(1996) Dispersion of particle systems by Brownian flows, with Erhan
Çinlar ps pdf
(1995) Random measures carried by Brownian flows on R^d ps pdf
(1993) Stochastic Flows: Dispersion of a mass distribution and Lagrangian observations of a random field pdf format
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